About Phoenix Bioinformatics

We provide a home to critical community-driven genetic research infrastructure platforms. By hosting and stewarding curated databases and specialized digital tools like MorphoBank and TAIR, we support high-quality research, accelerate scientific advancement, and help to maximize efficiency for the benefit of society. With support from our members and subscribers at institutional and museum libraries, we deliver tools researchers rely on in their daily work.

We’re working toward a future that includes a thriving and diverse ecosystem of digital research resources, sustained by a range of funding models, but all responsive to research needs, and offering purpose-built tools and information. 

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Published projects on MorphoBank
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Publications used to inform TAIR
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Users across MorphoBank and TAIR

Phoenix’s story

Phoenix Bioinformatics is a US-based 501(c)3 nonprofit organization founded in 2013 — but our story begins long before that, with The Arabidopsis thaliana Information Resource (TAIR).

TAIR was born in 1999 as an essential companion to the first Arabidopsis thaliana genome publication, bringing together a curated catalogue of gene functions, along with key references from the literature, visualization tools, and community resources. TAIR quickly became the leading centralized resource for all A. thaliana information, saving researchers countless hours of manual research across disparate databases.

In its early years TAIR was funded through grants from the National Science Foundation (NSF). After funding expired, the team behind TAIR founded Phoenix Bioinformatics, pioneering a new sustainable funding model to keep this vital resource up-to-date and accessible for researchers. 

In 2018, Phoenix extended its support to MorphoBank. Started in 2001, also with support from the NSF, MorphoBank is a collaborative Open Access research tool for morphological phylogenetics. Like TAIR, it’s a community-led platform providing key research infrastructure, making it a natural fit for Phoenix’s mission. In 2021, MorphoBank fully transitioned to Phoenix when hosting of the platform transferred from Stony Brook University. 

Today, we strategically invest in the scientific and technological capabilities of our platforms, working in close collaboration with our researcher user community to ensure that MorphoBank and TAIR offer exceptional tools and functionality, and meet the highest standards for accessibility and discoverability. 

In 2025, Phoenix successfully completed a massive MorphoBank replatforming effort, bringing the underlying technologies and user-interface up-to-date and concluded a three-year project to reannotate the A. thaliana genome, TAIR12. 

Our Staff

Erica Bakker, PhD
Scientific Curator

Erica is a scientific curator linking papers to the TAIR database as well as adding GO terms based on paper curation. She earned her BS/MS in plant breeding and crop protection and PhD in plant sciences from Wageningen University in the Netherlands, and completed her post-doc in computational biology at the University of Chicago. She worked for seven years as a project leader at Dow AgroSciences on gene discovery projects.

Tanya Berardini, PhD
Chief Scientific Officer

Tanya is a co-founder of Phoenix Bioinformatics, and director of both MorphoBank and TAIR. She has been with the TAIR project since 2002. Her expertise spans data curation in plant biology and paleobiology, community engagement, and bridging the communications between scientists and software developers. She contributes to the Gene Ontology and AgBioData consortia, and holds a B.S. from the University of the Philippines and a PhD from Boston University.

Xingguo Chen, MS
Director of Engineering

Xingguo is the Director of Engineering and Tech Lead at Phoenix, where she has been driving technical excellence since 2017. With deep expertise across the full lifecycle of web application development, she leads the organization’s technical direction. She champions the adoption of AI technologies to keep Phoenix at the forefront of innovation. Known for building scalable systems and solving complex challenges, she leads with both rigor and forward-thinking vision. She holds an MS from Stanford University.

Eileen Conroy
Operations Assistant

Eileen brings over ten years of administrative, operations, and human resources experience in tech and biotech to her work at Phoenix. She earned her BS degree from Kent State University in biochemistry and public health.

Amina Khababa, MS
Sales Director

Amina joined Phoenix in 2019, bringing 7 years of research experience across both industry and academia. She holds a Bachelor of Science in Physiology from San Francisco State University and a Master’s degree in Biomedical Science with a focus on Stem Cell Science — a joint program between SFSU and Stanford University. After a successful research career, Amina transitioned into sales, where she combines her scientific expertise with a passion for connecting the right solutions to customer needs.

Brooke Long-Fox, PhD
Data Curation Scientist

Brooke has been with Phoenix Bioinformatics since July 2022, where she supports data curation and stewardship for MorphoBank, an open-access repository for biodiversity research. She holds a PhD and MS in Paleontology from South Dakota Mines and a BS in Geology from Texas Christian University. Her work helps researchers organize, preserve, and reuse morphological data used in biodiversity, phylogenetic, and paleobiological research.

Connie Ng
Chief Financial Officer

Connie is the Chief Financial Officer at Phoenix Bioinformatics, where she has served since 2018. She brings more than 25 years of experience in Accounting, Finance, and Human Resources across the high-tech, software, and service industries. Connie earned a Bachelor of Science degree in Finance, with a minor in Economics, from the University of Wisconsin and is recognized for her strong financial leadership, operational expertise, and people-focused approach to business management.

Alyssa Proia, MS
Bioinformatician

Alyssa is an Air Force veteran and bioinformatician at Phoenix, where she has worked since fall of 2023. Her primary responsibilities center on the TAIR12 genome reannotation project and biocuration efforts with AgBioData’s natural language processing group, including testing various AI platforms. With over 14 years of experience in systems engineering and test and evaluation, she holds a BS in Biomedical Engineering from Worcester Polytechnic Institute and an MS in Bioinformatics from Johns Hopkins University.

Leonore Reiser, PhD
Principal Biocuration Scientist

Leonore is a Principal Biocuration Scientist at Phoenix Bioinformatics. She was one of the original curators of The Arabidopsis Information Resource (TAIR) and has been with Phoenix since 2015. Her primary responsibilities center on data curation for TAIR and she also serves on the AgBioData (www.agbiodata.org) steering committee. Leonore earned her PhD in Plant Biology from UC Berkeley, where she also conducted postdoctoral research in maize genetics.

Swapnil Sawant, MS
Senior Software Engineer

Swapnil joined Phoenix Bioinformatics in 2018 and serves as a Senior Software Engineer. He led TAIR’s migration from a legacy monolith to a modern cloud architecture, built PhyloGenes — an NSF-funded interactive platform for evolutionary biology — and now develops Phoenix’s production AI agent systems. Swap holds a Master’s in Computing from the University of Utah and is a Fellow of the British Computer Society (FBCS).

Marcela Karey Tello-Ruiz, PhD
Program Manager

Marcela is AgBioData’s Program Manager. Her interdisciplinary background spans medical and population genetics, comparative plant genomics, biocuration, and science communication. She holds a Biochemical Engineering degree from Tecnológico de Monterrey and a PhD in Genetics from SUNY Stony Brook, with training at Cold Spring Harbor Laboratory and the Broad Institute, and prior service as AgBioData Steering Committee Member and SGV Working Group Chair.

Josh Young, MS
Executive Director & Board Member

As executive director, Josh is focused on board engagement, community relations, culture, funding, and strategy.. He joined Phoenix in December, 2021. Josh found a passion for improved access to data, better administration, and stronger communities following completion of an undergraduate degree in biology and went on to earn graduate degrees in environmental science and public administration. He previously worked on the development and governance of digital research resources in atmospheric science, oceanography, as well as natural resource management.

Our Board

Debbie Alexander, DPhil
Board Secretary

Debbie is the Director of Business Development at 23andMe, focusing on innovative healthcare and research partnerships. She has over 12 years of experience in business development roles spanning the nonprofit, academic, Digital Health, and BioPharma sectors (including Scientific Curator at TAIR). Debbie holds a DPhil in Plant Sciences from the University of Oxford and was a postdoctoral researcher at the Carnegie Institute for Science, Stanford University.

Rebecca Bryant, PhD
Board Member

Rebecca is Senior Program Officer with OCLC Research, where she conducts research and develops programming to support 21st century libraries and their parent institutions, particularly as it relates to scholarly communications and research infrastructure. She previously worked as an administrator at the University of Illinois and community director at ORCID.

Jennifer Gibson
Board Member

Jennifer is Executive Director of Dryad, the open data publishing platform and community committed to the sharing and reuse of all research data. Since 2005, she has worked with scientists, funders, publishers, libraries, developers and others to accelerate discovery through transformations in research communication, research culture, and technological infrastructure.

Hilmar Lapp, MS
Board Chair

Hilmar is an Open Research Faculty at Neuromatch, specializing in FAIR and reproducible data, software, and workflows in biostatistics and bioinformatics. With over two decades of experience, he leads and collaborates on major projects in genomics, evolutionary informatics, and serves on the Imageomics Institute leadership team. He’s a co-founder of Data Carpentry and the Dryad digital archive.

Mathew Lau
Board Member

Mathew Lau is a seasoned finance executive with nearly three decades of experience in strategy and finance. He currently serves as CFO at the California Academy of Sciences and has held leadership roles at both for-profit and nonprofit organizations, including the Public Library of Science (PLOS) and AAA Northern California, Nevada, and Utah. Mathew brings deep expertise in financial oversight, governance, and strategic planning to the board. He is passionate about advancing science-based initiatives in ways that are both impactful and financially sustainable.

Christine Orr, MLS
Board Member

Christine Orr is the Senior Director of Business and Community Development at BioOne, where she drives strategic initiatives designed to advance the mission of sustainably maximizing access to research. She has more than three decades of revenue- and communications-focused roles across mission-driven and for-profit organizations including American Institute of Physics, Ringgold, and OSA – the Optical Society. Christine is active in the scholarly publishing community and holds an MLS from Long Island University.

Nicholas Provart, PhD
Board Member

Nicholas Provart, chair of the Department of Cell & Systems Biology at the University of Toronto, leads the Bio-Analytic Resource (BAR) with tools for gene expression analysis, receiving ~4M monthly views. He co-founded the International Arabidopsis Informatics Consortium, presides over the Multinational Arabidopsis Steering Committee, and teaches five bioinformatics MOOCs on Coursera.

Kevin Smith, MLS, JD
Board Member

Kevin Smith Recently retire as the Director of Libraries at Colby College in Maine. He is a lawyer and a librarian, and has spent years teaching librarians and faculty about copyright. For a decade he served as Director of the Office for Copyright and Scholarly Communications at Duke University. In 2016 he became the Dean of Libraries at the University of Kansas, where he also taught Copyright Law in the KU School of Law. He moved to Maine, and Colby, in 2022, where he has continued to teach an undergraduate course about copyright and the music industry. Smith is the author of numerous articles and two books about how copyright law impacts the practice of librarians and university faculty, as well as two MOOCs addressing those topics.

Josh Young, MS
Executive Director & Board Member

Josh found his calling twenty years ago at a research organization that was struggling to access, share, and use data. Josh recognized a need for improved access to data, better administration, and stronger communities and went on to earn graduate degrees in environmental science and public administration in pursuit of these goals. He has worked in atmospheric science, oceanography, as well as natural resource management.

Careers

Join Phoenix and help us achieve our vision of an integrated, computable, evolving, sustainable body of scientific knowledge available to all researchers everywere.

Corporate information

Please see our Sponsors page for more information at http://phoenixbioinfo.org/sponsors.

Phoenix Bioinformatics